DFT optimized structure of URA(w):URA(h) Trans basepair


Intra-basepair Parameters

Buckle(°)-2.05
Open angle(°)9.07
Propeller (°)2.52
Stagger (Å)0.01
Shear (Å)2.70
Stretch (Å)3.04

Basepair Geometry

C1'-C1' Distance(Å)11.39
C6-C8 Distance (Å)7.72
Opening (°)106.34
Glycosidic angle- 1 (°)9.75
Glycosidic angle- 2 (°)27.45

Quantum Chemical interaction energy = -9.33 Kcal/mol

(Ref: Roy et al., J.Phy.Chem.B, 112, 3786, 2008)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.