DFT optimized structure of model URA(w):URA(h) Cis basepair


Intra-basepair Parameters

Buckle(°)-0.15
Open angle(°)-10.15
Propeller (°)0.23
Stagger (Å)0.01
Shear (Å)-2.61
Stretch (Å)3.12

Basepair Geometry

C1'-C1' Distance(Å)9.47
C6-C8 Distance (Å)7.7
Opening (°)72.43
Glycosidic angle- 1 (°)37.49
Glycosidic angle- 2 (°)69.91

Quantum Chemical interaction energy = -6.16 Kcal/mol

(Ref: Panigrahi et.al ,Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.