DFT optimized structure of model URA(h):URA(s) Trans basepair


Intra-basepair Parameters

Buckle(°)-67.98
Open angle(°)26.13
Propeller (°)-20.92
Stagger (Å)0.97
Shear (Å)2.36
Stretch (Å)3.67

Basepair Geometry

C1'-C1' Distance(Å)8.13
C6-C8 Distance (Å)6.80
Opening (°)69.09
Glycosidic angle- 1 (°)78.07
Glycosidic angle- 2 (°)30.55

Quantum Chemical interaction energy = -7.12 Kcal/mol

(Ref: Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.