DFT optimized structure of model URA(W):URA(W) Trans basepair


Intra-basepair Parameters

Buckle(°)-0.34
Open angle(°)0.02
Propeller (°)-0.89
Stagger (Å)0.00
Shear (Å)-2.58
Stretch (Å)2.89

Basepair Geometry

C1'-C1' Distance(Å)11.17
C6-C8 Distance (Å)8.61
Opening (°)180.0
Glycosidic angle- 1 (°)18.3
Glycosidic angle- 2 (°)18.3

Quantum Chemical interaction energy = -9.00 Kcal/mol

(Ref: Panigrahi et.al ,J. Biomol. Struc. Dyn.,2011, 3)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.