DFT optimized structure of model URA(W):URA(S) Trans basepair


Intra-basepair Parameters

Buckle(°)-57.66
Open angle(°)-46.64
Propeller (°)7.35
Stagger (Å)-0.3
Shear (Å)2.96
Stretch (Å)3.25

Basepair Geometry

C1'-C1' Distance(Å)7.96
C6-C8 Distance (Å)7.82
Opening (°)154.38
Glycosidic angle- 1 (°)34.17
Glycosidic angle- 2 (°)60.16

Quantum Chemical interaction energy = -6.14 Kcal/mol

(Ref: Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.