DFT optimized structure of model GUA(h):URA(h) Trans basepair


Intra-basepair Parameters

Buckle(°)0.2
Open angle(°)-33.32
Propeller (°)-0.21
Stagger (Å)0.00
Shear (Å)-0.46
Stretch (Å)3.31

Basepair Geometry

C1'-C1' Distance(Å)9.79
C6-C8 Distance (Å)4.94
Opening (°)153.01
Glycosidic angle- 1 (°)41.81
Glycosidic angle- 2 (°)18.04

Quantum Chemical interaction energy = -5.31 Kcal/mol

(Ref: Panigrahi et.al ,Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.