DFT optimized structure of model GUA(S):URA(W) Trans basepair


Intra-basepair Parameters

Buckle(°)10.54
Open angle(°)-10.96
Propeller (°)36.74
Stagger (Å)-0.37
Shear (Å)-0.46
Stretch (Å)2.99

Basepair Geometry

C1'-C1' Distance(Å)7.29
C6-C8 Distance (Å)8.26
Opening (°)89.73
Glycosidic angle- 1 (°)107.51
Glycosidic angle- 2 (°)26.24

Quantum Chemical interaction energy = -9.82 Kcal/mol

(Ref: Panigrahi et al., Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.