DFT optimized structure of model GUA(W):GUA(S) Cis basepair


Intra-basepair Parameters

Buckle(°)13.18
Open angle(°)13.25
Propeller (°)49.17
Stagger (Å)0.68
Shear (Å)-0.3
Stretch (Å)2.86

Basepair Geometry

C1'-C1' Distance(Å)7.99
C6-C8 Distance (Å)9.99
Opening (°)78.22
Glycosidic angle- 1 (°)54.25
Glycosidic angle- 2 (°)124.32

Quantum Chemical interaction energy = -11.98 Kcal/mol

(Ref: Panigrahi et.al , Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.