DFT optimized structure of model GUA(h):CYT(s) Trans basepair


Intra-basepair Parameters

Buckle(°)-37.71
Open angle(°)-56.96
Propeller (°)-17.31
Stagger (Å)-1.13
Shear (Å)0.06
Stretch (Å)4.12

Basepair Geometry

C1'-C1' Distance(Å)6.70
C6-C8 Distance (Å)6.02
Opening (°)87.79
Glycosidic angle- 1 (°)47.45
Glycosidic angle- 2 (°)82.14

Quantum Chemical interaction energy = -8.58 Kcal/mol

(Ref: Panigrahi et. al., Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.