DFT optimized structure of model GUA(h):CYT(h) Trans basepair


Intra-basepair Parameters

Buckle(°)10.93
Open angle(°)-6.36
Propeller (°)-14.61
Stagger (Å)-0.10
Shear (Å)2.65
Stretch (Å)3.21

Basepair Geometry

C1'-C1' Distance(Å)11.43
C6-C8 Distance (Å)6.70
Opening (°)178.71
Glycosidic angle- 1 (°)15.21
Glycosidic angle- 2 (°)17.07

Quantum Chemical interaction energy = -8.22 Kcal/mol

(Ref: Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.