DFT optimized structure of model GUA(h):CYT(h) Cis basepair


Intra-basepair Parameters

Buckle(°)3.29
Open angle(°)-13.21
Propeller (°)-10.54
Stagger (Å)-0.08
Shear (Å)-0.4
Stretch (Å)3.57

Basepair Geometry

C1'-C1' Distance(Å)10.00
C6-C8 Distance (Å)5.24
Opening (°)144.73
Glycosidic angle- 1 (°)39.02
Glycosidic angle- 2 (°)49.43

Quantum Chemical interaction energy = -8.17 Kcal/mol

(Ref: Panigrahi et al.,Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.