DFT optimized structure of GUA(W):CYT(W) Trans basepair


Intra-basepair Parameters

Buckle(°)-17.61
Open angle(°)13.42
Propeller (°)-37.98
Stagger (Å)0.06
Shear (Å)-2.54
Stretch (Å)3.02

Basepair Geometry

C1'-C1' Distance(Å)10.44
C6-C8 Distance (Å)10.33
Opening (°)148.55
Glycosidic angle- 1 (°)38.04
Glycosidic angle- 2 (°)63.42

Quantum Chemical interaction energy =-11.83 Kcal/mol

(Ref: Panigrahi et.al ,J. Biomol. Struc. Dyn.,2011, 3 )

Intra-basepair parameters and basepair geometry are calculated by NUPARM.