DFT optimized structure of model GUA(S):CYT(W) Cis basepair


Intra-basepair Parameters

Buckle(°)-4.84
Open angle(°)-24.69
Propeller (°)-58.19
Stagger (Å)-0.25
Shear (Å)2.42
Stretch (Å)3.40

Basepair Geometry

C1'-C1' Distance(Å)7.82
C6-C8 Distance (Å)9.13
Opening (°)53.57
Glycosidic angle- 1 (°)128.69
Glycosidic angle- 2 (°)33.5

Quantum Chemical interaction energy = -10.91 Kcal/mol

(Ref. Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.