DFT optimized structure of model CYT(W):URA(W) Trans basepair


Intra-basepair Parameters

Buckle(°)-0.06
Open angle(°)4.75
Propeller (°)-0.28
Stagger (Å)0.01
Shear (Å)-0.25
Stretch (Å)3.04

Basepair Geometry

C1'-C1' Distance(Å)9.74
C6-C8 Distance (Å)8.49
Opening (°)175.30
Glycosidic angle- 1 (°)29.75
Glycosidic angle- 2 (°)33.85

Quantum Chemical interaction energy = -8.27 Kcal/mol

(Ref: Panigrahi et al., Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.