DFT optimized structure of model CYT(W):URA(W) Cis basepair


Intra-basepair Parameters

Buckle(°)1.71
Open angle(°)-3.58
Propeller (°)-23.93
Stagger (Å)-0.29
Shear (Å)0.17
Stretch (Å)2.92

Basepair Geometry

C1'-C1' Distance(Å)8.58
C6-C8 Distance (Å)8.38
Opening (°)2.57
Glycosidic angle- 1 (°)61.00
Glycosidic angle- 2 (°)58.32

Quantum Chemical interaction energy = -10.95 Kcal/mol

(Ref: Panigrahi et al., Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.