DFT optimized structure of model CYT(w):CYT(h) Trans basepair


Intra-basepair Parameters

Buckle(°)-1.93
Open angle(°)-16.43
Propeller (°)36.52
Stagger (Å)0.81
Shear (Å)0.07
Stretch (Å)3.52

Basepair Geometry

C1'-C1' Distance(Å)10.13
C6-C8 Distance (Å)7.35
Opening (°)97.85
Glycosidic angle- 1 (°)48.39
Glycosidic angle- 2 (°)21.65

Quantum Chemical interaction energy = -9.01 Kcal/mol

(Ref: Panigrahi et al., Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.