DFT optimized structure of model CYT(w):CYT(h) Cis basepair


Intra-basepair Parameters

Buckle(°)18.94
Open angle(°)-21.03
Propeller (°)-70.75
Stagger (Å)-1.23
Shear (Å)1.31
Stretch (Å)3.37

Basepair Geometry

C1'-C1' Distance(Å)10.31
C6-C8 Distance (Å)7.41
Opening (°)92.96
Glycosidic angle- 1 (°)48.59
Glycosidic angle- 2 (°)31.84

Quantum Chemical interaction energy = -8.95 Kcal/mol

(Ref: Panigrahi et al., Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.