DFT optimized structure of model CYT(h):CYT(s) Cis basepair


Intra-basepair Parameters

Buckle(°)-58.74
Open angle(°)-43.51
Propeller (°)11.44
Stagger (Å)-0.08
Shear (Å)1.83
Stretch (Å)4.17

Basepair Geometry

C1'-C1' Distance(Å)7.62
C6-C8 Distance (Å)7.1
Opening (°) 29.58
Glycosidic angle- 1 (°)40.97
Glycosidic angle- 2 (°)107.81

Quantum Chemical interaction energy = -1.00 Kcal/mol

(Ref: Panigrahi et al.,Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.