DFT optimized structure of model CYT(S):CYT(+) Trans basepair


Intra-basepair Parameters

Buckle(°)-38.56
Open angle(°)-85.77
Propeller (°)65.54
Stagger (Å)4.82
Shear (Å)3.30
Stretch (Å)3.96

Basepair Geometry

C1'-C1' Distance(Å)6.99
C6-C8 Distance (Å)7.81
Opening (°)174.72
Glycosidic angle- 1 (°)45.46
Glycosidic angle- 2 (°)74.56

Quantum Chemical interaction energy = -3.46 Kcal/mol

(Ref: Panigrahi et.al ,Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.