DFT optimized structure of model ADE(w):URA(h) Trans basepair


Intra-basepair Parameters

Buckle(°)-10.18
Open angle(°)-31.74
Propeller (°)6.63
Stagger (Å)0.18
Shear (Å)-0.49
Stretch (Å)3.41

Basepair Geometry

C1'-C1' Distance(Å)11.85
C6-C8 Distance (Å)8.88
Opening (°)105.26
Glycosidic angle- 1 (°)46.2
Glycosidic angle- 2 (°)26.03

Quantum Chemical interaction energy = -1.81 Kcal/mol

(Ref: Panigrahi et.al ,Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.