DFT optimized structure of model ADE(s):URA(w) Cis basepair


Intra-basepair Parameters

Buckle(°)2.34
Open angle(°)-6.63
Propeller (°)2.83
Stagger (Å)0.03
Shear (Å)0.16
Stretch (Å)2.98

Basepair Geometry

C1'-C1' Distance(Å)6.0
C6-C8 Distance (Å)8.59
Opening (°)70.19
Glycosidic angle- 1 (°)65.06
Glycosidic angle- 2 (°)130.51

Quantum Chemical interaction energy = -9.43 Kcal/mol

(Ref: Roy et al., J.Phy.Chem.B, 2008,112,3786)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.