DFT optimized structure of model ADE(s):URA(h) Cis basepair


Intra-basepair Parameters

Buckle(°)-0.43
Open angle(°)-47.41
Propeller (°)2.54
Stagger (Å)-1.11
Shear (Å)5.23
Stretch (Å)6.56

Basepair Geometry

C1'-C1' Distance(Å)7.24
C6-C8 Distance (Å)7.28
Opening (°)1.50
Glycosidic angle- 1 (°)123.75
Glycosidic angle- 2 (°)58.53

Quantum Chemical interaction energy = -1.34 Kcal/mol

(Ref: Panigrahi et.al ,Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.