DFT optimized structure of model ADE(H):URA(S) Trans basepair


Intra-basepair Parameters

Buckle(°)-85.99
Open angle(°)-25.43
Propeller (°)-17.14
Stagger (Å)-1.70
Shear (Å)0.99
Stretch (Å)2.94

Basepair Geometry

C1'-C1' Distance(Å)6.96
C6-C8 Distance (Å)5.14
Opening (°)77.98
Glycosidic angle- 1 (°)30.21
Glycosidic angle- 2 (°)66.38

Quantum Chemical interaction energy = -2.48 Kcal/mol

(Ref: Panigrahi et.al ,Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.