DFT optimized structure of model ADE(h):URA(h) Trans basepair


Intra-basepair Parameters

Buckle(°)-8.65
Open angle(°)-35.19
Propeller (°)4.92
Stagger (Å)0.22
Shear (Å)-0.49
Stretch (Å)3.4

Basepair Geometry

C1'-C1' Distance(Å)9.74
C6-C8 Distance (Å)4.96
Opening (°)148.50
Glycosidic angle- 1 (°)45.07
Glycosidic angle- 2 (°)17.07

Quantum Chemical interaction energy = -3.94 Kcal/mol

(Ref: Panigrahi et.al ,Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.