DFT optimized structure of ADE(H):URA(W) Trans basepair


Intra-basepair Parameters

Buckle(°)-3.20
Open angle(°)7.49
Propeller (°)1.91
Stagger (Å)0.00
Shear (Å)0.15
Stretch (Å)2.79

Basepair Geometry

C1'-C1' Distance(Å)9.65
C6-C8 Distance (Å)6.09
Opening (°)120.66
Glycosidic angle- 1 (°)23.1
Glycosidic angle- 2 (°)28.7

Quantum Chemical interaction energy = -13.31 Kcal/mol

(Ref: Roy et al., J.Phy.Chem.B, 2008,112,3786)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.