DFT optimized structure of ADE(w):GUA(s) Cis base pair


Intra-basepair Parameters

Buckle(°)-4.35
Open angle(°)34.47
Propeller (°)-16.38
Stagger (Å)0.04
Shear (Å)2.23
Stretch (Å)3.07

Basepair Geometry

C1'-C1' Distance(Å)7.28
C6-C8 Distance (Å)10.63
Opening (°)92.72
Glycosidic angle- 1(°)83.11
Glycosidic angle- 2(°)135.64

Quantum Chemical interaction energy =-6.02 Kcal/mol

(Ref: Roy et. al.,J. Phy Chem.B., 2008,112,3786)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.