DFT optimized structure of model ADE(s):CYT(w) Trans base pair


Intra-basepair Parameters

Buckle(°)-7.53
Open angle(°)0.85
Propeller (°)-2.29
Stagger (Å)-0.17
Shear (Å)2.01
Stretch (Å)2.99

Basepair Geometry

C1'-C1' Distance(Å)9.52
C6-C8 Distance (Å)9.41
Opening (°)104.89
Glycosidic angle- 1 (°)87.79
Glycosidic angle- 2 (°)10.64

Quantum Chemical interaction energy =- 4.88 Kcal/mol

(Ref: Panigrahi et. al, unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.