DFT optimized structur of model ADE(h):CYT(s) Trans basepair


Intra-basepair Parameters

Buckle(°)-62.14
Open angle(°)-34.79
Propeller (°)-10.79
Stagger (Å)-0.53
Shear (Å)1.3
Stretch (Å)3.85

Basepair Geometry

C1'-C1' Distance(Å)7.23
C6-C8 Distance (Å)6.2
Opening (°)75.75
Glycosidic angle- 1 (°)34.04
Glycosidic angle- 2 (°)81.68

Quantum Chemical interaction energy = -1.81 Kcal/mol

(Ref: Panigrahi et. al, Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.