DFT optimized structure of ADE(W):CYT(S) Cis basepair


Intra-basepair Parameters

Buckle(°)42.14
Open angle(°)-35.2
Propeller (°)-13.1
Stagger (Å)-1.23
Shear (Å)-0.76
Stretch (Å)4.21

Basepair Geometry

C1'-C1' Distance(Å)9.61
C6-C8 Distance (Å)10.1
Opening (°)30.39
Glycosidic angle- 1 (°)108.22
Glycosidic angle- 2 (°)34.76

Quantum Chemical interaction energy = -10.00 Kcal/mol

(Ref: Panigrahi et. al, J. Biomol Struct. Dyn.,29,3,2011)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.