DFT optimized structure of ADE(H):CYT(W) Trans base pair


Intra-basepair Parameters

Buckle(°)-0.35
Open angle(°)-2.73
Propeller (°)0.09
Stagger (Å)0.00
Shear (Å)2.41
Stretch (Å)2.93

Basepair Geometry

C1'-C1' Distance(Å)11.11
C6-C8 Distance (Å)7.31
Opening (°)109.08
Glycosidic angle- 1 (°)25.29
Glycosidic angle- 2 (°)7.09

Quantum Chemical interaction energy = -12.71 Kcal/mol

(Ref: Panigrahi et.al ,J. Biomol. Struc. Dyn.,2011, 3)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.