DFT optimized structure of model ADE(H):CYT(S) Cis basepair


Intra-basepair Parameters

Buckle(°)-51.52
Open angle(°)-35.74
Propeller (°)-17.82
Stagger (Å)-1.22
Shear (Å)0.99
Stretch (Å)4.16

Basepair Geometry

C1'-C1' Distance(Å)7.86
C6-C8 Distance (Å)7.12
Opening (°)21.68
Glycosidic angle- 1 (°)28.13
Glycosidic angle- 2 (°)110.68

Quantum Chemical interaction energy = -8.17 Kcal/mol

(Ref: Panigrahi et. al, Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.