DFT optimized structure of model ADE(s):ADE(w) Trans basepair


Intra-basepair Parameters

Buckle(°) -1.53
Open angle(°)0.55
Propeller (°)0.03
Stagger (Å)-0.06
Shear (Å) 2.18
Stretch (Å)3.02

Basepair Geometry

C1'-C1' Distance(Å)10.21
C6-C8 Distance (Å)10.23
Opening (°)103.38
Glycosidic angle-1(°)103.38
Glycosidic angle-2(°)7.61

Quantum Chemical interaction energy = -4.38 Kcal/mol

(Ref: Panigrahi et. al, Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.