DFT optimized structure of ADE(H):ADE(S) Cis basepair


Intra-basepair Parameters

Buckle(°)17.50
Open angle(°)-13.43
Propeller (°)18.22
Stagger (Å)-1.13
Shear (Å)-2.63
Stretch (Å)3.01

Basepair Geometry

C1'-C1' Distance(Å)6.59
C6-C8 Distance (Å)6.67
Opening (°)3.78
Glycosidic angle- 1 (°)32.68
Glycosidic angle- 2 (°)144.26

Quantum Chemical interaction energy = -10.17 Kcal/mol

(Ref: Unpublished data)

Intra-basepair parameters and basepair geometry are calculated by NUPARM.